Logica COVID-19 FHIR Profile Library IG
0.9.0 - CI Build

Logica COVID-19 FHIR Profile Library IG - Local Development build (v0.9.0). See the Directory of published versions

Table of Contents

..0 Table of Contents
...1 Home
...2 Logica Comparison to E ICR
...3 Patient Demographics and Vital Signs
...4 Case Reporting Info
...5 Exposure Info
...6 Signs Symptoms Diagnoses Comorbidities
...7 Lab Profiles
...8 Smoking Status Pregnancy Status
...9 Exposure Questionnaire
...10 History
...11 Artifacts Summary
....11.1 COVID 19 Exposure Core profile
....11.2 Coded Laboratory Observation Base
....11.3 Laboratory Observation Base
....11.4 Laboratory Observation Panel Base
....11.5 Quantitative Laboratory Observation Base
....11.6 COVID 19 Exposure Questionnaire
....11.7 COVID-19 gastrointestinal and hepatic underlying condition
....11.8 COVID-19 hemoglobinopathy underlying condition
....11.9 COVID-19 ICD 10 Diagnosis
....11.10 COVID-19 immune underlying condition
....11.11 COVID-19 renal underlying condition
....11.12 COVID-19 respiratory underlying condition
....11.13 COVID-19 SNOMED Diagnosis
....11.14 COVID 19 Symptoms Absent
....11.15 COVID 19 Symptoms Present
....11.16 COVID19 uncategorized underlying condition
....11.17 COVID-19 cardiovascular underlying condtition
....11.18 COVID-19 immunocompromised underlying condition
....11.19 COVID-19 General Comorbidities Absent
....11.20 COVID-19 General Comorbidities Present
....11.21 COVID-19 metabolic underlying condition
....11.22 COVID-19 neuroligic underlying condition
....11.23 Case-Patient Report Identifying Information
....11.24 Gestational Age at Onset of Illness
....11.25 Human coronavirus 229E+HKU1+OC43+NL63 RNA [Presence] in Nasopharynx by NAA with non-probe detection
....11.26 Human coronavirus 229E RNA [Presence] in Nasopharynx by NAA with non-probe detection
....11.27 Human coronavirus HKU1 RNA [Presence] in Nasopharynx by NAA with non-probe detection
....11.28 Human coronavirus NL63 RNA [Presence] in Nasopharynx by NAA with non-probe detection
....11.29 Human coronavirus OC43 RNA [Presence] in Nasopharynx by NAA with non-probe detection
....11.30 Known Exposure
....11.31 Pregnancy Status
....11.32 SARS-CoV-2 (COVID19) IgG Ab [Presence] in DBS by Immunoassay
....11.33 SARS-CoV-2 (COVID19) Ab [Units/volume] in Serum or Plasma by Immunoassay
....11.34 SARS-CoV-2 (COVID19) IgA Ab [Presence] in Serum, Plasma, or Blood by Rapid imunoassay
....11.35 SARS-CoV-2 (COVID19) IgA + IgM [Presence] in Serum or Plasma by Immunoassay
....11.36 SARS-CoV-2 (COVID19) Ab [Presence] in Serum or Plasma by Immunoassay
....11.37 SARS-CoV-2 (COVID19) Ag [Presence] in Respiratory specimen by Rapid immunoassay
....11.38 SARS-CoV-2 (COVID19) E gene [Presence] in Respiratory specimen by NAA with probe detection
....11.39 SARS-CoV-2 (COVID19) E gene [Presence] in Serum or Plasma by NAA with probe detection
....11.40 SARS-CoV-2 (COVID19) N gene [Presence] in Nasopharynx by NAA with probe detection
....11.41 SARS-CoV-2 (COVID19) N gene [Presence] in Respiratory specimen by Nucleic acid amplification using CDC primer-probe set N1
....11.42 SARS-CoV-2 (COVID19) N gene [Presence] in Respiratory specimen by Nucleaic acid amplification using CDC primer-probe set N2
....11.43 SARS-CoV-2 (COVID19) N gene [Presence] in Serum or Plasma by NAA with probe detection
....11.44 SARS-CoV-2 (COVID19) N gene [Presence] in Unspecified specimen by Nucleic acid amplification using primer-probe set N1
....11.45 SARS-CoV-2 (COVID19) N gene [Presence] in Unspecified specimen by Nucleic acid amplification using primer-probe set N2
....11.46 SARS-CoV-2 (COVID19) N gene [Cycle Threshold #] in Unspecified specimen by Nucleic acid amplification using primer-probe set N1
....11.47 SARS-CoV-2 (COVID19) N gene [Cycle Threshold #] in Unspecified specimen by Nucleic acid amplification using primer-probe set N2
....11.48 SARS-CoV-2 (COVID19) ORF1ab region [Presence] in Respiratory specimen by NAA with probe detection
....11.49 SARS-CoV-2 (COVID19) [Presence] in Unspecified specimen by Organism specific culture
....11.50 SARS-CoV-2 (COVID19) RNA [Cycle Threshold#] in Respiratory specimen by NAA with probe detection
....11.51 SARS-CoV-2 (COVID19) RNA [Log#/volume] (viral load) in Unspecified specimen by NAA with probe detection
....11.52 SARS-Cov-2 (COVID19) RNA panel - Unspecified specimen by NAA with probe detection
....11.53 Sars-CoV-2 (COVID19) RNA [Presence] in Nasopharynx by NAA with probe detection
....11.54 SARS-CoV-2 (COVID19) RNA [Presence] in Saliva (oral fluid) by NAA with probe
....11.55 SARS-CoV-2 (COVID19) RNA [Presence] in Saliva (oral fluid) by Seqencing
....11.56 SARS-CoV-2 (COVID19) RNA [Cycle Threshold#] in Unspecified specimen by NAA with probe detection
....11.57 SARS-CoV-2 (COVID19) S gene [Presence] in Serum or Plasma by NAA with probe detection
....11.58 SARS-coV-2 (COVID19) whole genome [Nucleiotide sequence] in Isolate by Sequencing
....11.59 SARS-CoV + SARS-Cov-2 (COVID19) Ag [Presence] in Respiratory specimen by Rapid immunoassay
....11.60 SARS-like coronavirus N gene [Presence] in Unspecified specimen by NAA with probe detection
....11.61 SARS-like coronavirus N gene [Cycle Threshold #] in Unspecified specimen by NAA with probe detection
....11.62 SARS-related coronavirus RNA [Presence] in Respiratory specimen by NAA with probe detection
....11.63 SARS-CoV-2 (COVID19) IgA Ab [Units/volume] in Serum or Plasma by Immunoassay
....11.64 SARS-CoV-2 (COVID19) IgA Ab [Presence] in Serum or Plasma by Immunoassay
....11.65 SARS-CoV-2 (COVID19) IgG Ab [Units/volume] in Serum or Plasma by Immunoassay
....11.66 SARS-CoV-2 (COVID19) IgG+IgM Ab [Presence] in Serum or Plasma by Immunoassay
....11.67 SARS-CoV-2 (COVID19) IgG Ab [Presence] in Serum or Plasma by Immunoassay
....11.68 SARS-CoV-2 (COVID19) IgG and IgM panel - Serum or Plasma Qualitative by Rapid immunoassay
....11.69 SARS-CoV-2 (COVID19) IgG and IgM panel - Serum or Plasma by Immunoassay
....11.70 SARS-CoV-2 (COVID19) IgM Ab [Units/volume] in Serum or Plasma by Immunoassay
....11.71 SARS-CoV-2 (COVID19) IgM Ab [Presence] in Serum or Plasma by Immunoassay
....11.72 SARS-CoV-2 (COVID19) IgM Ab [Presence] in Serum or Plasma by Rapid immunoassay
....11.73 SARS-CoV-2 (COVID19) Ab [Interpretation] in Serum or Plasma
....11.74 SARS-CoV-2 (COVID19) E gene [Presence] in Unspecified specimen by NAA with probe detection
....11.75 SARS-CoV-2 (COVID19) E gene [Cycle Threshold #] in Unspecified specimen by NAA with probe detection
....11.76 SARS-CoV-2 (COVID19) N gene [Presence] in Respiratory specimen by NAA with probe detection
....11.77 SARS-CoV-2 (COVID19) N gene [Presence] in Unspecified specimen by NAA with probe detection
....11.78 SARS-CoV-2 (COVID19) N gene [Cycle Threshold #] in Unspecified specimen by NAA with probe detection
....11.79 SARS-CoV-2 (COVID19) ORF1ab region [Cycle Threshold #] in Unspecified specimen by NAA with probe detection
....11.80 SARS-CoV-2 (COVID19) ORF1ab region [Presence] in Unspecified specimen by NAA with probe detection
....11.81 SARS-CoV-2 (COVID19) ORF1ab region [Cycle Threshold #] in Respiratory specimen by NAA with probe detection
....11.82 SARS-CoV-2 (COVID19) RNA panel - Respiratory specimen by NAA with probe detection
....11.83 SARS-CoV-2 (COVID19) RNA [Presence] in Nasopharynx by NAA with non-probe detection
....11.84 SARS-CoV-2 (COVID19) RNA [Presence] in Respiratory specimen by NAA with probe detection
....11.85 SARS-CoV-2 (COVID19) RNA [Presence] in Serum or Plasma by NAA with probe detection
....11.86 SARS-CoV-2 (COVID19) RNA [Presence] in Unspecified specimen by NAA with probe detection
....11.87 SARS-CoV-2 (COVID19) RdRp gene [Presence] in Respiratory specimen by NAA with probe detection
....11.88 SARS-CoV-2 (COVID19) RdRp gene [Presence] in Unspecified specimen by NAA with probe detection
....11.89 SARS-CoV-2 (COVID19) RdRp gene [Cycle Threshold #] in Respiratory specimen by NAA with probe detection
....11.90 SARS-CoV-2 (COVID19) RdRp gene [Cycle Threshold #] in Unspecified specimen by NAA with probe detection
....11.91 SARS-CoV-2 (COVID19) S gene [Presence] in Respiratory specimen by NAA with probe detection
....11.92 SARS-CoV-2 (COVID19) S gene [Presence] in Unspecified specimen by NAA with probe detection
....11.93 SARS-CoV-2 (COVID19) S gene [Cycle Threshold #] in Respiratory specimen by NAA with probe detection
....11.94 SARS-CoV-2 (COVID19) S gene [Cycle Threshold #] in Unspecified specimen by NAA with probe detection
....11.95 SARS-related coronavirus+MERS coronavirus RNA [Presence] in Respiratory specimen by NAA with probe detection
....11.96 SARS-related coronavirus RNA [Presence] in Unspecified specimen by NAA with probe detection
....11.97 Tobacco smoking status
....11.98 Travel History
....11.99 Certainty of Absence
....11.100 Certainty of Presence
....11.101 Reporting Priority
....11.102 COVID-19 cardiovascular underlying condition reference set
....11.103 COVID-19 Disease Severity Value Set
....11.104 COVID-19 ICD 10 Diagnosis Value Set
....11.105 COVID-19 SNOMED CT Diagnosis Value Set
....11.106 COVID-19 Signs and Symptoms Severity Value Set
....11.107 COVID-19 Signs and Symptoms Value Set
....11.108 COVID-19 uncategorized underlying condition reference set
....11.109 COVID-19 gastrointestinal or hepatic underlying condition reference set
....11.110 COVID-19 hemoglobinopathy underlying condition reference set
....11.111 COVID-19 immune underlying condition reference set
....11.112 COVID-19 immunocompromised underlying condition reference set
....11.113 COVID-19 Underlying Medical Condition Value Set
....11.114 COVID-19 metabolic underlying condition reference set
....11.115 COVID-19 neurologic underlying condition reference set
....11.116 COVID-19 renal underlying condition reference set
....11.117 COVID-19 respiratory underlying condition reference set
....11.118 Certainty of Absence Value Set
....11.119 Certainty of Presence Value Set
....11.120 Close Contact Setting Value Set
....11.121 Country Codes Value Set
....11.122 Detected-Not Detected-Inconclusive Value Set
....11.123 Healthcare Occupation Value Set
....11.124 Known Exposure LOINC Answer Value Set
....11.125 Positive/Negative Value Set
....11.126 Pregnacy Status Value Set
....11.127 Reporting Priorities Value Set
....11.128 Smoking Status Value Set
....11.129 State Codes Value Set
....11.130 Yes/No Value Set